An unprecedented window into how diseases take hold years before symptoms appear
48 comments
·July 18, 2025chithanh
> What UK Biobank is revealing, scan by scan and layer by layer, is that disease doesn’t arrive out of nowhere. It accumulates quietly, shaped by genes, environment, and habits.
I think that is already known for a while. It's called functional reserve, and was a big topic in HIV patients (and then again for SARS-CoV-2).
Like people with higher cognitive capabilities will be protected by those a bit longer before onset of HIV-associated neurocognitive disorder (or even dementia).
Same for kidneys: They have a functional reserve that you are born with gets used up during life, until it is gone. Acute kidney disease treatment is aimed at preserving whatever little function is left.
tasty_freeze
I am a 61 year old guy. I've never been overweight, never smoked, I've never been drunk and drink only infrequently, and have been fitter than average ... sometimes very fit. A few years ago I decided to make an undirected kidney donation. I thought I'd be a slam dunk. Everything was great, except my eGFR (estimate granular filtration rate) was 73, and for many people it is more like 110, which disqualified me, as after donating my number would get cut in half, putting me at some risk.
So I pulled up blood work results going back 15 years that I had records for and found that 73 was my high score! It typically was mid 60s, with a low of 61. I have no idea why it is so low. Anyway, this is the reason I'm relating this story. It seems odd that my kidney function has gone up. It wasn't just a fluke -- I've had bloodwork done at least five times since then and I'm always in the mid 70s now.
Aurornis
eGFR is an indirect measurement of kidney function. It can be slightly lower in some people with normal kidney function for various reasons.
There are additional kidney function tests that would be used for a more complete picture of kidney function if it was suspected that you had a kidney condition. There are more direct GFR tests, minus the ‘e’ prefix which means estimated. However, a better blood test that is more accessible would be Cystatin C. Worth getting one of those as a baseline at some point.
In the content of donation, though, it’s not worth risking it. It’s best to play it safe. If you happened to have been inspired by the kidney donation story and blog that circulated in rationalist communities, it’s also worth noting that it was not a great source of information about the relative risks of the procedure, despite being presented as comprehensive and well researched.
coldtea
Maybe you lost weight or changed some aspects of your diet after 50?
gniv
Your diet is less salty maybe?
flyinglizard
I previously looked at eGFR numbers and they seem very ballpark-ish and prone to fluctuation, as their name implies. My understanding is that they are used to detect acute cases, rather than to give a real measurement of your kidneys if you’re well.
manmal
It would be interesting what this functional reserve is, right? The microbiome perhaps, or intracellular minerals? Some other thing we haven’t even identified?
chithanh
In case of kidneys, my understanding is that only a certain subset of glomerular cells are actively filtrating blood at any given point. The other cells form the functional reserve, and start to become active once the other cells age out, or are disrupted due to an event (like poisoning, such as mycotoxin damage from eating moldy food). Once the functional reserve is exhausted however, no new cells can become active and you are left with whatever dwindling GFR you have, until you get a transplant.
With the vascular system you have example arterial elasticity which is an important measure of vascular health. When your blood vessels become less elastic it does not immediately cause symptoms, but it increases the risk of heart disease and stroke. This is also why periodontitis and gum disease is a predictor for vascular diseases: Bacteria enter the bloodstream through inflamed oral mucosa and form plaques along the blood vessels.
findthewords
>"This is also why periodontitis and gum disease is a predictor for vascular diseases: Bacteria enter the bloodstream through inflamed oral mucosa and form plaques along the blood vessels."
And yet in the year 2025 dental care is globally treated as seperate from other healthcare, a strange historical artifact that clings on.
krisoft
> It would be interesting what this functional reserve is, right?
It is most likely not a single thing.
Looking for "the functional reserve" is like looking for which part of an airplane is the "multiple redundancy". Or which line of code is the "fault tolerance" in google's code base. It is not a single part, it is all the parts working together.
Just looking at the kidney example (which is not the only kind of function we can describe having functional reserve.) functional reserve is that there are two kidneys, and each kidney have multiple renal pyramids, and if this or that part of the kidney functions worse other parts compensate and will work overtime.
Depletion of functional reserve is not something literally running out (like a fuel tank running empty), it is more like a marauding gang shooting computers in a cloud data center. Sure initially all works as it used to, because the system identifies the damaged components and routes the processing to other ones. But if they keep it up they will damage enough that the data center will keel over and can't do what it could do before.
(No, I'm not saying that a human body is literally a data center, or literally an airplane. What I'm saying is that all three shares the common theme that some process is maintained in the presence of faults.)
tsoukase
Functional reserve means you are completely well but the start of the disease is coming closer as the former is depleting.
Another case is when disease starts subtly and slowly _with_ initial symptoms that are otherwise not debilitating. Eg Alzheimer's starting decades ago by being forgetful.
I have no idea which one the post is reffering to.
findthewords
Thankfully biology has redundancy, so a single cosmic bit flip does not send humans into a BSOD.
tsoukase
In biomed sciences we rarely refer to the huge amount of resiliency of living organisms. They are so robust, stable and self healing that it would need a fleet of human made machines to cover the basic difficulties.
readthenotes1
A very elderly doctor referred to "cognitive reserve", lamenting hen had more of it when younger.
allthedatas
Dis-eases that are symptoms ... of ... what?
Take hold?
Like they just float in there out of the blue and possess your body? Or like the habits that caused the dis-ease took hold?
It's a good thing all those dis-ease tests are 100% accurate and you can trust the manufacturers to not exaggerate and they are not trying to sell you treatments just for symptoms that can have any number of causes.
findthewords
Preventative treatment for disease is ten, hundred, thousand times cheaper than treatment ex post facto.
Aurornis
This holds true for many things. It’s easier to stay in shape and maintain a healthy weight than it is to recover from getting out of shape or overweight. The longer someone spends out of shape or overweight, the harder it becomes to escape the cycle. There’s no better time to start than now.
As for preventative medical treatment: This one is a difficult topic. There’s a popular misconception that getting a lot of different blood tests and imaging scans is a good idea to identify conditions early, but most people don’t understand that these tests (including imagine) are prone to a lot of false positives. Excessive testing has been shown time and time again to lead to unnecessary interventions, leading to worse outcomes on average. A number of previously routine medical tests are now not recommended until later age or until other symptoms appear because routine testing was producing too many unnecessary interventions, producing a net negative benefit.
It’s a hard concept to wrap our heads around when we’re so attached to the idea that more testing means better information. It’s a huge problem in the alternative medicine community where podcast grifters will encourage people to get various tests like organic acid tests or various “levels” testing, then prescribe complex treatment programs with dozens of supplements. The people chasing these tests then throw themselves far out of balance with excess supplements while sinking thousands of dollars into repeat testing
fxtentacle
Only if you have an excellent health insurance plan. Otherwise, preventive treatment costs you money, while curative treatment is paid for you.
Sounds like a misguided incentive ...
DarmokJalad1701
My insurance covers annual bloodwork/physicals as well as immunizations. I am pretty sure most health insurance policies do.
Aurornis
The ACA made this standard. It’s been like this for a long time.
When we were hiring a lot of people out of college, I spent way more time than I expected teaching them about how healthcare works and how to find their own information. We found that a lot of them would build their idea about how health insurance works from years of reading Reddit posts: They thought visiting the doctor was always going to be a $1000 bill or a single accident was going to medically bankrupt them, because those are the stories they saw on Reddit. I would explain things like the free annual physical and many just wouldn’t believe me. It’s really tough to cut through the confusion out there.
xedrac
So exercise, eating healthy, fasting, brushing/flossing teeth, consistent sleep schedule, daily sun exposure, good relationships, and stress management all depend on a health insurance plan?
HPsquared
You certainly need to "pay" for those yourself, insurance or not (I guess that's probably your point). Going for a run doesn't go on any billing schedule or contribute to GDP, it's all self-funded from your own personal resources of time and energy.
nmstoker
I think you may be missing the point: preventative treatment is typically much less expensive, for instance behaviour and dietary changes do not require drugs at all and avoiding some conditions can be helped by drugs which have long since come off patents.
But even with your point, all insurance companies I've ever had cover with in the UK have had some element of support for preventing illness (periodic assessments, support material and trackers) and, at least with people covered under company schemes, they clearly have an incentive to offer more if you are at risk of becoming affected by a preventable illness.
chiefalchemist
It’s interesting they make no mention of trying to understand the body’s ability to self-defend and self-heal. That is, it’s possible to get X (e.g., cancer) and the immune system wins the fight (before it’s even detected).
In theory it’s possible the best early treatment is no treatment at all; that there might be such a thing as too-early detection.
Jolter
This is a well known phenomenon in medicine. It is always carefully considered when making public health decisions regarding e.g. screening programs and intervention best practices.
For example, a PSA test is useful to detect cancer of the prostate, if a male patient has urination problems. But doing general screening for high PSA values in middle aged men is not considered a good idea, because there are too many false positives and it would likely lead to many unnecessary invasive interventions.
Earw0rm
It's also why "early detection leads to longer survival" claims in cancer patients has to be treated with quite some care.
Two people develop a fatal cancer at T0. One is diagnosed at T1, the other at T2, both die at T3.
It looks like the first person survived longer with cancer than the second, but they didn't: the interventions had no effect, it's just a statistical artifact.
This is by no means always the case - earlier detected cancer is more treatable - but it still needs to be controlled for.
jajko
Have a friend working as urology surgeon - basically all men get prostate cancer, its just a function of time (unless you die young). Most of them is benign, or cause few issues and are often let alone.
If you would run scans on all males above say 45 there would be endless stream of operations happening, all of which would lower quality of life for everybody, and sometimes shorten their lives a bit or a bit more. Any public healthcare system would be brought to the edge of collapse by just this since surgeries are supremely expensive everywhere, that's not just US invention.
kulu2002
Great study
senectus1
thats a cool study.
there should be more like it. (thanks for the archive link btw!)
fuckyah
[dead]
alganet
We have mainly three big things that started roughly at the same time: war (on Ukraine, then Gaza, then trade), artificial intelligence, and the covid flu.
I wonder if, in parts, the effects of the so called "mild covid" and "long covid" (usually attributed to post-flu) are nothing but psychological. There seems to be quite a cloud of uncertainty around the vast array of reported possible symptoms.
klabb3
> I wonder if, in parts, the effects of the so called "mild covid" and "long covid" […] are nothing but psychological. There seems to be quite a cloud of uncertainty around the vast array of reported possible symptoms.
Uncertainty does not imply psychological. It’s like saying ”our users report a lot of different bugs that we can’t reproduce, they must be all imagined”, except the body is OOMs more complex than even the most carelessly developed enterprise application. There is uncertainty in every part of medicine, all the time. That’s why it takes time and is difficult (often too difficult) to root cause everything that happens.
If you have a novel pathogen with neurological effects (see olfactory impacts - people literally losing their sense of smell), it would be my first guess of mysterious symptoms rather than.. checks notes the war in Ukraine? Honestly I’m not sure how to connect your first sentence to the next.
terminalshort
Doctors have a habit of blowing off unknowns as "it's all in your head" (as if that somehow makes it out of their jurisdiction). There used to be a diagnosis of "female hysteria." After the invention of the MRI doctors were able to see the physical damage caused by the disease and they renamed it multiple sclerosis.
alganet
Do you think I was talking about the sense of smell?
inglor_cz
Me neither, but there is a theory that Putin grew increasingly disconnected from reality when isolating himself from a potential Covid infection, and that this might have contributed to his decision to go all in.
Should this be the truth, there would be an actual connection between the virus and the war.
alganet
That's very original but not the kind of thing I proposed.
I am sure there are many ways one could be disconnected from reality.
pjc50
The Gaza conflict has been running since before 1948 at various levels of intensity, and the Ukraine conflict since 2012.
It's possible that social media is making people ill, but long COVID is very real and very different.
snarf21
There is growing evidence that long covid is actually CIRS (toxic mold usually from living in water damaged buildings) triggered by covid. Only 25% of people have the genes for CIRS, but then it takes exposure and a immune shock to get your systems out of whack (lyme, covid, etc.) The vast array of symptoms come from the mycotoxins becoming present in every part of your body and affecting all your systems, especially your gut biome.
Source: I have it and am on the long road to recovery. Before I moved out of my house this spring, I could have days with several migraine level headaches and where my vision was so messed up I could barely see 10 feet. I don't have bad days like that anymore since I moved to my sisters. (I have lots of other symptoms too, this is just a sample.)
Lutger
As someone who has seen multiple people close to me, including my wife, struggle with long covid, I can tell you the answer is simply no. Anecdotal, yes, but this shouldn't be an argument.
We are several years in now. These statements are actually pretty hurtful for people who have been through a lot. It's like saying you could beat cancer if you only wanted to, or if you didn't think all those negatives thoughts, you wouldn't be so ill now.
Not only is it suggesting that this misery is in some way 'your own fault', but it also implies that it isn't real, or serious, at least not in the same way other diseases are.
And yes, psychological problems are real too, indeed. But it is not the same. The origin narrative around a disease does in fact matter for people trying to cope with it, and how others see you, for insurance, for politics and medical care. Please be more respectful about it.
marky1991
This sounds like "you shouldn't suggest that long COVID is psychosomatic because doing so makes me or others feel bad" to me. Which part of what you're saying am I misunderstanding?
alganet
Perhaps you are right. I took the vaccines and was pretty lucky to not suffer any major consequences.
What I said could be read as offensive and some kind of "your own fault" to laymen. However, that is not the idea.
I have psychological issues of my own and I completely understand when someone tries to say "it's all my own fault", so I'm empathetic to your critic.
odyssey7
I would reframe this and ask whether psychiatrists should be spending a lot more time understanding the patient’s immune system history and other factors. Brain fogs and other symptoms are understood by many patients to be modulated by other health processes, and physical fitness is considered a treatment by some practitioners, yet psychiatry is recovering from a legacy of medical dogma in which the brain and the immune system are completely separate, due to the idea of the blood-brain barrier. I would recommend to look more comprehensively at patients’ clinically relevant information, which I believe would produce deeper, systems-level understanding and treatments in more than enough cases to be worthwhile.
tgv
The "between-the-ears" brigade is at it again. Just asking questions.
alganet
The very fact that you are hypothesizing about my intentions is, in fact, an act of asking questions on its own.
You are worried that I might be suggesting some form of conspiracy, but these worries are all in your head.
There is uncertainty about the effects post acquiring a covid flu. If there weren't, the article wouldn't mention the efforts in trying to figure out what these symptoms and causes are. I'm sure they are also "asking questions".
Instead of criticizing me, perhaps you could try to put your guard down and try to investigate if other more reputable sources asked the same questions as I did:
https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=psyc...
I haven't read those papers, and I'm not qualified to discuss them in depth. However, they indicate that my assessment of the situation is not as outlandish as you suggest.
coldtea
For most people Ukraine and Gaza are just very remote worries, unless of course they're related to people there or close to the conflicts.
AI might be real stressor for those losing their job, or bad for those using it as a virtual love interest or therapist, but it's mostly a remote worry for most too.
Of the three, only the covid flu could have real mild/long effects. But if you want to seek other psychological factors, iflation, the job market, the loneliness epidemic, and other such things are much more likely ones...
toss1
>>There seems to be quite a cloud of uncertainty around the vast array of reported possible symptoms.
Just because it is a "cloud of uncertainty" to you does not mean it is to people actually studying the phenomenon.
Multiple studies are already identifying scores of biomarkers correlated with Long COVID, e.g., "Identified from 28 studies and representing six biological classifications, 113 biomarkers were significantly associated with long COVID"[0]. The same type of phenomenon happened with Chronic Fatigue Syndrome, now identified as "Myalgic encephalomyelitis" where patients were long disregarded as simply having psychological problems, and the same with many auto-immune disorders. These can all be discovered with a sub-30second DDG search.
Yes, the democracies of the world are under assault from right-wing or authoritarian movements and this is dramatically increasing uncertainty, worry, and indeed harm for everyone. But before you start dismissing disease processes as caused by social psychologies and causing more harm to those already suffering, perhaps search for more concrete causes first.
alganet
It seems you misread my comment profoundly. I never dismissed any actual biological causes.
It's ok, lots of people do this mistake. A more critical look would notice that I was only questioning aspects of the phenomena that are currently unexplained. In the long run, your pick for how to respond would sound rushed and desperate.
https://archive.md/0Fg1E